Jie:LabNotes/allele specific methylation

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1st round ASM validation[edit]

ASM validation of DNMT3B, LSP1, MATN4, MMP9[edit]

  1. ASM validation of these four genes on 8 cell lines: refer to LabNotes [1]
  2. ASE validation of MMP9 on PGP1L and PGP1F: refer to LabNotes [2]

ASE validation of fuzzyl methylated genes[edit]

  1. ASE validation of fuzzyl methylated genes: refer to LabNotes [3]
  2. ASM validation of GLIPR1L2_BJ:
  3. genotype and ASE validation of GLIPR1L2 on BJ and BJ-iPS12: refer to LabNotes [4]

ASM from same donor and from different donors[edit]

refer to LabNotes on [5]

2nd round ASM validation[edit]

ASM validation of r2 and SNP overlapped regions: refer to LabNotes on [6]

3rd round cell type and individual dependent ASM validation[edit]

refer to LabNotes on [7] refer to LabNotes on [8]

4th round known imprinted gene ASM validation[edit]

refer to LabNotes on [9]